Conference paper
Automated composition of scientific workflows in mass spectrometry-based proteomics
Numerous software utilities operating on mass spectrometry (MS) data are described in the literature that provide specific operations as building blocks for the assembly of purposespecific workflows. Working out which tools and combinations are applicable or optimal is often hard: insufficient annotation of tool functions and interfaces impedes finding viable tool combinations, and potentially compatible tools may not, in practice, operate together.
Thus researchers face difficulties in selecting practical and effective data analysis pipelines for a specific experimental design.
Language: | English |
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Publisher: | IEEE |
Year: | 2018 |
Pages: | 360-361 |
Proceedings: | 14th IEEE International Conference on eScience, e-Science 2018 |
ISBN: | 1538691566 , 1538691574 , 9781538691564 and 9781538691571 |
Types: | Conference paper |
DOI: | 10.1109/eScience.2018.00098 |
Automated workflow composition Bio.tools ELIXIR Mass spectrometry Proteomics Scientific workflows Semantic domain modeling Workflow management systems
Benchmark testing Bioinformatics MS Mass spectroscopy Ontologies Semantics Tools automated workflow composition bio.tools biology computing data analysis data analysis pipelines mass spectrometry mass spectrometry data mass spectrometry-based proteomics mass spectroscopy proteomics scientific workflows semantic domain modeling workflow management systems