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Journal article

Phylogenetic ctDNA analysis depicts early stage lung cancer evolution

By Abbosh, Christopher1; Birkbak, Nicolai Juul1; Wilson, Gareth A.1; Jamal-Hanjani, Mariam1; Constantin, Tudor12; Salari, Raheleh12; Quesne, John Le21; Moore, David A.21; Veeriah, Selvaraju1; Rosenthal, Rachel1; Marafioti, Teresa22; Kirkizlar, Eser12; Watkins, Thomas B. K.23; McGranahan, Nicholas1; Ward, Sophia23; Martinson, Luke21; Riley, Joan21; Fraioli, Francesco24; Bakir, Maise Al23; Grönroos, Eva23; Zambrana, Francisco1; Endozo, Raymondo24; Bi, Wenya Linda25; Fennessy, Fiona M.25; Sponer, Nicole12; Johnson, Diana H.1; Laycock, Joanne1; Shafi, Seema1; Czyzewska-Khan, Justyna1; Rowan, Andrew23; Chambers, Tim23; Matthews, Nik23; Turajlic, Samra23; Hiley, Crispin T.23; Lee, Siow-Ming22; Forster, Martin D.1; Ahmad, Tanya24; Falzon, Mary22; Borg, Elaine22; Lawrence, David24; Hayward, Martin24; Kolvekar, Shyam24; Panagiotopoulos, Nikolaos24; Janes, Sam M.24; Thakrar, Ricky24; Ahmed, Asia24; Blackhall, Fiona26; Summers, Yvonne27; Hafez, Dina12; Naik, Ashwini12; Ganguly, Apratim12; Kareht, Stephanie12; Shah, Rajesh2; Joseph, Leena2; Quinn, Anne Marie2; Crosbie, Phil A.2; Naidu, Babu3; Middleton, Gary4; Langman, Gerald3; Trotter, Simon3; Nicolson, Marianne5; Remmen, Hardy5; Kerr, Keith5; Chetty, Mahendran5; Gomersall, Lesley5; Fennell, Dean A.21; Nakas, Apostolos6; Rathinam, Sridhar6; Anand, Girija7; Khan, Sajid8; Russell, Peter9; Ezhil, Veni10; Ismail, Babikir11; Irvin-Sellers, Melanie11; Prakash, Vineet11; Lester, Jason F.13; Kornaszewska, Malgorzata14; Attanoos, Richard15; Adams, Haydn14; Davies, Helen14; Oukrif, Dahmane1; Akarca, Ayse U.1; Hartley, John A.16; Lowe, Helen L16; Lock, Sara17; Iles, Natasha16; Bell, Harriet16; Ngai, Yenting16; Elgar, Greg23; Szallasi, Zoltan Imre18,19; Schwarz, Roland F.20; Herrero, Javier16; Stewart, Aengus23; Quezada, Sergio A.16; Van Loo, Peter23; Dive, Caroline26; Lin, C. Jimmy12; Rabinowitz, Matthew12; Aerts, Hugo J.W.L.25; Hackshaw, Allan16; Shaw, Jacqui A.21; Zimmermann, Bernhard G.12; Swanton, Charles1 ...and 93 more

From

CRUK Lung Cancer Centre of Excellence1

University Hospital of South Manchester2

Birmingham Heartlands Hospital3

University of Birmingham4

University of Aberdeen School of Medicine and Dentistry5

Leicester University Hospitals6

North Middlesex Hospital7

Royal Free Hospital8

The Princess Alexandra Hospital NHS Trust9

Royal Surrey County Hospital NHS Foundation Trust10

Ashford and St. Peters' Hospital11

Natera, Inc12

Velindre Hospital13

University Hospital Llandough14

University Hospital of Wales15

University College London16

Whittington Health NHS Trust17

Department of Bio and Health Informatics, Technical University of Denmark18

Cancer Genomics, Department of Bio and Health Informatics, Technical University of Denmark19

Max Delbrück Center for Molecular Medicine in the Helmholtz Association20

University of Leicester21

University College London Hospitals NHS Foundation Trust22

The Francis Crick Institute23

University College Hospital London24

Massachusetts General Hospital/Harvard Medical School25

University of Manchester26

Christie Hospital27

...and 17 more

The early detection of relapse following primary surgery for non-small cell lung cancer and the characterization of emerging subclones seeding metastatic sites might offer new therapeutic approaches to limit tumor recurrence. The potential to non-invasively track tumor evolutionary dynamics in ctDNA of early-stage lung cancer is not established.

Here we conduct a tumour-specific phylogenetic approach to ctDNA profiling in the first 100 TRACERx (TRAcking non-small cell lung Cancer Evolution through therapy (Rx)) study participants, including one patient co-recruited to the PEACE (Posthumous Evaluation of Advanced Cancer Environment) post-mortem study.

We identify independent predictors of ctDNA release and perform tumor volume limit of detection analyses. Through blinded profiling of post-operative plasma, we observe evidence of adjuvant chemotherapy resistance and identify patients destined to experience recurrence of their lung cancer. Finally, we show that phylogenetic ctDNA profiling tracks the subclonal nature of lung cancer relapse and metastases, providing a new approach for ctDNA driven therapeutic studies.

Language: English
Publisher: Nature Publishing Group UK
Year: 2017
Pages: 446-451
Journal subtitle: International Weekly Journal of Science
ISSN: 14764687 and 00280836
Types: Journal article
DOI: 10.1038/nature22364

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