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Journal article

Top Tree Compression of Tries

From

Technical University of Denmark1

Department of Applied Mathematics and Computer Science, Technical University of Denmark2

Algorithms and Logic, Department of Applied Mathematics and Computer Science, Technical University of Denmark3

University of Wrocław4

University of Haifa5

We present a compressed representation of tries based on top tree compression [ICALP 2013] that works on a standard, comparison-based, pointer machine model of computation and supports efficient prefix search queries. Namely, we show how to preprocess a set of strings of total length n over an alphabet of size σ into a compressed data structure of worst-case optimal size O(n/ log σn) that given a pattern string P of length m determines if P is a prefix of one of the strings in time O(min (mlog σ, m+ log n)).

We show that this query time is in fact optimal regardless of the size of the data structure. Existing solutions either use Ω (n) space or rely on word RAM techniques, such as tabulation, hashing, address arithmetic, or word-level parallelism, and hence do not work on a pointer machine. Our result is the first solution on a pointer machine that achieves worst-case o(n) space.

Along the way, we develop several interesting data structures that work on a pointer machine and are of independent interest. These include an optimal data structures for random access to a grammar-compressed string and an optimal data structure for a variant of the level ancestor problem.

Language: English
Publisher: Springer US
Year: 2021
Pages: 3602-3628
ISSN: 14320541 and 01784617
Types: Journal article
DOI: 10.1007/s00453-021-00869-w
ORCIDs: Bille, Philip and Gørtz, Inge Li

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