Journal article
Differential expression and co-expression gene networks reveal candidate biomarkers of boar taint in non-castrated pigs
Boar taint (BT) is an offensive odour or taste observed in pork from a proportion of non-castrated male pigs. Surgical castration is effective in avoiding BT, but animal welfare issues have created an incentive for alternatives such as genomic selection. In order to find candidate biomarkers, gene expression profiles were analysed from tissues of non-castrated pigs grouped by their genetic merit of BT.
Differential expression analysis revealed substantial changes with log-transformed fold changes of liver and testis from -3.39 to 2.96 and -7.51 to 3.53, respectively. Co-expression network analysis revealed one module with a correlation of -0.27 in liver and three modules with correlations of 0.31, -0.44 and -0.49 in testis.
Differential expression and co-expression analysis revealed candidate biomarkers with varying biological functions: phase I (COQ3, COX6C, CYP2J2, CYP2B6, ACOX2) and phase II metabolism (GSTO1, GSR, FMO3) of skatole and androstenone in liver to steroidgenesis (HSD17B7, HSD17B8, CYP27A1), regulation of steroidgenesis (STARD10, CYB5R3) and GnRH signalling (MAPK3, MAP2K2, MAP3K2) in testis.
Overrepresented pathways included "Ribosome", "Protein export" and "Oxidative phosphorylation" in liver and "Steroid hormone biosynthesis" and "Gap junction" in testis. Future work should evaluate the biomarkers in large populations to ensure their usefulness in genomic selection programs.
Language: | English |
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Publisher: | Nature Publishing Group UK |
Year: | 2017 |
Pages: | 12205 |
ISSN: | 20452322 |
Types: | Journal article |
DOI: | 10.1038/s41598-017-11928-0 |
ORCIDs: | 0000-0002-7412-6402 , 0000-0003-2780-6592 and Kadarmideen, Haja N. |
Androsterone Animal Husbandry Animals Biomarkers Feasibility Studies Gene Expression Profiling Gene Expression Regulation Gene Regulatory Networks Liver Male Meat Metabolic Networks and Pathways Odorants Quantitative Trait Loci Selection, Genetic Selective Breeding Skatole Sus scrofa Testis