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Journal article

Bioconductor: open software development for computational biology and bioinformatics

By Gentleman, R.C.; Carey, V.J.; Bates, D.M.; Bolstad, B.; Dettling, M.; Dudoit, S.; Ellis, B.; Gautier, Laurent1,2; Ge, Y.C.; Gentry, J.; Hornik, K.; Hothorn, T.; Huber, W.; Iacus, S.; Irrizary, R.; Leisch, F.; Li, C.; Maechler, M.; Rossini, A.J.; Sawitzki, G.; Smith, C.; Smyth, G.; Tierney, L.; Yang, J.Y.H.; Zhang, J.H. ...and 15 more

From

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark1

Department of Systems Biology, Technical University of Denmark2

The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results.

We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples.

Language: English
Publisher: BioMed Central
Year: 2004
Pages: R80-R80
ISSN: 1474760x , 14747596 , 14656914 and 14656906
Types: Journal article
DOI: 10.1186/gb-2004-5-10-r80
Keywords

Acute Lymphocytic Leukemia Application Programming Interface Computational Biology Data Package Internet Portable Document Format Reproducibility of Results Software Software Project

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