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Journal article

Pseudogene repair driven by selection pressure applied in experimental evolution

By Anand, Amitesh1; Olson, Connor A.1; Yang, Laurence1; Sastry, Anand V.1; Catoiu, Edward1; Choudhary, Kumari Sonal1; Phaneuf, Patrick V.1; Sandberg, Troy E.1; Xu, Sibei1; Hefner, Ying1; Szubin, Richard1; Feist, Adam2,3,4; Palsson, Bernhard3,4,5 ...and 3 more

From

University of California at San Diego1

ALE Technology & Software Development, Research Groups, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark2

Network Reconstruction in Silico Biology, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark3

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark4

Big Data 2 Knowledge, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark5

Pseudogenes represent open reading frames that have been damaged by mutations, rendering the gene product non-functional. Pseudogenes are found in many genomes and are not always eliminated, even if they are potentially ‘wasteful’. This raises a fundamental question about their prevalence. Here we report pseudogene efeU repair that restores the iron uptake system of Escherichia coli under a designed selection pressure during adaptive laboratory evolution.

Language: English
Publisher: Nature Publishing Group UK
Year: 2019
Pages: 386-389
ISSN: 20585276
Types: Journal article
DOI: 10.1038/s41564-018-0340-2
ORCIDs: Feist, Adam , Palsson, Bernhard , 0000-0002-3720-4301 and 0000-0003-3240-3659
Keywords

Cation Transport Proteins DNA Mismatch Repair Directed Molecular Evolution Escherichia coli Escherichia coli Proteins Evolution, Molecular Iron Open Reading Frames Phylogeny Pseudogenes Selection, Genetic efeU' protein, E coli

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