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title:(Finding AND Common AND Sequence AND and AND Structure AND Motifs AND in AND a AND set AND of AND RNA AND sequences)

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10 items by relevance
1 Conference paper

Finding Common Sequence and Structure Motifs in a set of RNA sequences

Gorodkin, Jan; Heyer, Laurie J.; Stormo, Gary D.

Proceedings Fifth International Conference on Intelligent Systems for Molecular Biology — 1997, pp. 120-123

We present a computational scheme to search for the most common motif, composed of a combination of sequence and structure constraints, among a collection of RNA sequences. The method uses a simplified version of the Sankoff algorithm for simultaneous folding and alignment of RNA sequences

Year: 1997

Language: English

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2 Journal article

Finding common sequence and structure motifs in a set of RNA sequences

Gorodkin, J; Heyer, L J; Stormo, G D

Proceedings. International Conference on Intelligent Systems for Molecular Biology — 1997, Volume 5, pp. 120-123

We present a computational scheme to search for the most common motif, composed of a combination of sequence and structure constraints, among a collection of RNA sequences. The method uses a simplified version of the Sankoff algorithm for simultaneous folding and alignment of RNA sequences

Year: 1997

Language: English

More...
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3 Journal article

Finding the most significant common sequence and structure motifs in a set of RNA sequences

Gorodkin, Jan; Heyer, L.J.; Stormo, G.D.

Nucleic Acids Research — 1997, Volume 25, Issue 18, pp. 3724-3732

We present a computational scheme to locally align a collection of RNA sequences using sequence and structure constraints, In addition, the method searches for the resulting alignments with the most significant common motifs, among all possible collections, The first part utilizes a simplified

Year: 1997

Language: English

More...
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