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Journal article

MEMOTE for standardized genome-scale metabolic model testing

By Lieven, Christian1,12,23; Beber, Moritz Emanuel1,12,23; Olivier, Brett G.34; Bergmann, Frank T.37; Ataman, Meric38; Babaei, Parizad1,12,23; Bartell, Jennifer A.1,39; Blank, Lars M.40; Chauhan, Siddharth41; Correia, Kevin2; Diener, Christian3; Dräger, Andreas4; Ebert, Birgitta E.40; Edirisinghe, Janaka N.5; Faria, José P.5; Feist, Adam M.1,6,7; Fengos, Georgios38; Fleming, Ronan M. T.8; García-Jiménez, Beatriz9; Hatzimanikatis, Vassily38; van Helvoirt, Wout10; Henry, Christopher S.5; Hermjakob, Henning11; Herrgard, Markus J.1,12,13,23; Kaafarani, Ali1,12,23; Kim, Hyun Uk14; King, Zachary41; Klamt, Steffen15; Klipp, Edda16; Koehorst, Jasper J.17; König, Matthias16; Lakshmanan, Meiyappan18; Lee, Dong-Yup18; Lee, Sang Yup1,19; Lee, Sunjae20; Lewis, Nathan E.41; Liu, Filipe5; Ma, Hongwu21; Machado, Daniel22; Mahadevan, Radhakrishnan2; Maia, Paulo24; Mardinoglu, Adil20; Medlock, Gregory L.25; Monk, Jonathan M.41; Nielsen, Jens1; Nielsen, Lars Keld1,26; Nogales, Juan9; Nookaew, Intawat27; Palsson, Bernhard O.1,7,28; Papin, Jason A.25; Patil, Kiran Raosaheb22; Poolman, Mark29; Price, Nathan D.30; Resendis-Antonio, Osbaldo3; Richelle, Anne31; Rocha, Isabel32; Sánchez, Benjamín José1,23,33,35; Schaap, Peter J.17; Malik Sheriff, Rahuman S.11; Shoaie, Saeed20; Sonnenschein, Nikolaus1,33,35; Teusink, Bas34; Vilaca, Paulo24; Vik, Jon Olav10; Wodke, Judith A. H.16; Xavier, Joana C.36; Yuan, Qianqian21; Zakhartsev, Maksim10; Zhang, Cheng20 ...and 59 more

From

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark1

University of Toronto2

Universidad Nacional Autónoma de México3

Institute for Biomedical Informatics4

Argonne National Laboratory5

ALE Technology & Software Development, Research Groups, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark6

Network Reconstruction in Silico Biology, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark7

Leiden University8

CSIC9

Norwegian University of Life Sciences10

Wellcome Trust Genome Campus11

Computational Biology, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark12

Research Groups, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark13

Korea Advanced Institute of Science and Technology14

Max Planck Institute for Dynamics of Complex Technical Systems Magdeburg15

Humboldt University of Berlin16

Wageningen University & Research17

Agency for Science, Technology and Research, Singapore18

New Bioactive Compounds, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark19

KTH Royal Institute of Technology20

Chinese Academy of Sciences21

European Molecular Biology Laboratory22

iLoop, Translational Management, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark23

SilicoLife24

University of Virginia25

Quantitative Modeling of Cell Metabolism, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark26

Chalmers University of Technology27

Big Data 2 Knowledge, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark28

Oxford Brookes University29

Institute for Systems Biology30

University of California, San Diego School of Medicine31

University of Minho32

Section for Synthetic Biology, Department of Biotechnology and Biomedicine, Technical University of Denmark33

Vrije Universiteit Amsterdam34

Department of Biotechnology and Biomedicine, Technical University of Denmark35

Heinrich Heine University Düsseldorf36

Heidelberg University 37

Swiss Federal Institute of Technology Lausanne38

Infection Microbiology, Research Groups, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark39

RWTH Aachen University40

University of California at San Diego41

...and 31 more
Language: English
Publisher: Nature Publishing Group US
Year: 2020
Pages: 272-276
Journal subtitle: Science and Business of Biotechnology
ISSN: 15461696 and 10870156
Types: Journal article
DOI: 10.1038/s41587-020-0446-y
ORCIDs: Lieven, Christian , Beber, Moritz Emanuel , 0000-0002-5293-5321 , Bartell, Jennifer A. , 0000-0001-6674-895X , 0000-0001-7130-1765 , 0000-0002-1240-5553 , Feist, Adam M. , 0000-0001-5346-9812 , 0000-0001-6432-4694 , 0000-0002-9143-9726 , 0000-0001-8479-0262 , Herrgard, Markus J. , 0000-0002-2805-310X , 0000-0001-7224-642X , 0000-0003-1238-1499 , 0000-0003-2563-7561 , 0000-0002-0567-7075 , 0000-0001-8172-8981 , 0000-0003-1725-179X , 0000-0003-2356-3458 , 0000-0003-0599-3091 , 0000-0002-6428-5936 , 0000-0002-1270-9063 , 0000-0002-0848-8683 , 0000-0002-4254-6090 , 0000-0002-9955-6003 , Nielsen, Lars Keld , 0000-0002-4961-0833 , Palsson, Bernhard O. , 0000-0002-6166-8640 , 0000-0002-3972-5418 , 0000-0002-4157-0267 , 0000-0002-4346-6084 , 0000-0001-5834-4533 , Sonnenschein, Nikolaus , 0000-0003-3929-0423 , 0000-0002-7778-4515 , 0000-0001-9242-8968 and 0000-0002-3721-8586
Keywords

Biochemical networks Computational Biology Computational models Genome Metabolic Networks and Pathways Models, Biological Molecular Sequence Annotation Software Workflow

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